CDS

Accession Number TCMCG017C15307
gbkey CDS
Protein Id OMO92825.1
Location complement(join(62940..63016,63290..63359,63443..63562,63660..63767,64174..64381,64473..64896,65012..65217,65298..65524))
GeneID InterPro:IPR010286
Organism Corchorus olitorius
locus_tag COLO4_17298

Protein

Length 479aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01016326.1
Definition Ribosomal RNA large subunit methyltransferase F-like protein [Corchorus olitorius]
Locus_tag COLO4_17298

EGGNOG-MAPPER Annotation

COG_category J
Description Belongs to the methyltransferase superfamily. METTL16 RlmF family
KEGG_TC -
KEGG_Module -
KEGG_Reaction R07232        [VIEW IN KEGG]
KEGG_rclass RC00003        [VIEW IN KEGG]
RC00335        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K06970        [VIEW IN KEGG]
EC 2.1.1.181        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000154        [VIEW IN EMBL-EBI]
GO:0001510        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006417        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008173        [VIEW IN EMBL-EBI]
GO:0008174        [VIEW IN EMBL-EBI]
GO:0008649        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0008988        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009896        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016073        [VIEW IN EMBL-EBI]
GO:0016422        [VIEW IN EMBL-EBI]
GO:0016433        [VIEW IN EMBL-EBI]
GO:0016556        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0017069        [VIEW IN EMBL-EBI]
GO:0017070        [VIEW IN EMBL-EBI]
GO:0017148        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030629        [VIEW IN EMBL-EBI]
GO:0031167        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031331        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032269        [VIEW IN EMBL-EBI]
GO:0034248        [VIEW IN EMBL-EBI]
GO:0034249        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0035613        [VIEW IN EMBL-EBI]
GO:0040031        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0043484        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043488        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048024        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050684        [VIEW IN EMBL-EBI]
GO:0050779        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051248        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0052907        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061013        [VIEW IN EMBL-EBI]
GO:0061014        [VIEW IN EMBL-EBI]
GO:0061157        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070475        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080009        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0120048        [VIEW IN EMBL-EBI]
GO:0120049        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140102        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1903311        [VIEW IN EMBL-EBI]
GO:1903313        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCGAGCAAGAAGAGGAGAAGAAAGGAAGAGAGACCCAAGATCCACCCCAAAAACAAATACTCTGACAATCCACCTGATTTTGCTCTCTTAGCCTCTTTATACCCTTCATTCAAACCATTTGTGTTCTACAGTCGTGAAGGTCGACCCAAAATCGATTGGACTGACTTCAATGCCACCCGCGAACTCACCCGTGTCCTCCTTCTTCATGACCATGGTCTTGACTGGTGGATTCCTGATGGACAGCTCTGCCCTACTGTGCCCAACCGGTCCAACTACATCCATTGGATAGAAGATCTTCTCTCGTCTGACATTATTCCCAAAACTAATAGCAATGGAGATAATGTGAGGGGGTTTGATATAGGAACTGGAGCCAATTGCATCTACCCTCTTCTTGGTGCATCCCTTTTGGGTTGGAGTTTTGTTGCATCAGATGTGACTGATGTAGCACTAGAATGGGCAGAGAGGAATGTTAAAAGCAATCAACATGTTTCAGAGTTAATTGAGATTAGAAAAGTTAAATGTTCCCAAAACACCCATACTCCTGAGGTTTTAAACAATACTGAGTCTACTTGTTCTGAGGAAGGAGAAGGTTTGCCATCTTCTTCCTTTCATATGCCAGAAAGCAAAGATAAGCGTTATCATGGACCTCCCATCCTTGTCAACGTGGTAAGGGATGGTGAGAAATTTGACTTCTGCATGTGCAATCCTCCATTTTTTGAAAGCATTGAGGAAGCGGGATTGAATCCAAAAACTTCCTGTGGTGGGACTCATGAGGAGATGGTTTGTCCTGGTGGAGAAAAGGCTTTCATTACTTGTATTATTGAAGATAGTGCTGTGTTAAAGCAGTCTTTCAGGTGGTATACTTCAATGGTTGGAAGGAAAGTAAATCTTAAATTCCTAATAGCAAAGCTTCGAGAGGTCGGAGTAACTATTGTGAAAACGACCGAGTTTGTCCAAGGCCAAACATGTCGATGGGGGCTTGCTTGGTCCTTTGTGCCTCCTACAAAAAAGATAATTGCACCTCATGTGACTGAGAAGAATATTATTTCTTTCATGCTGGAGGGTCTTCAACGGCAGTTTGGTGCAGTACAAGTATTGCAGTCAGTTGAGTCCTTTTTCCACGCTGTTGGTGCATCATGTAAATCGAATGCCTCTACGTTTACAGTTGATATTACTGCATCAACTGATCACTGCAATGTGCTCTTGAGGAATGAAGTAAAACATCATGATGAAGTTGCCAGTTGCAGCAATGTGCAAGAGGCATCCCCAAACCTGTGTTTTCGTGTTTCGGTCTTTCAACAGATCCCAGGCACACTTCTTATCAAAGGATCATTACAGCATAGAGATAGCCCACTCTCAGGATTATTCTCCTCGATAATCCAACAGTTGGAGGATGCACTGAGAAGTAAGTTTTGTAGAGAAAAGGCAAATTTCTGA
Protein:  
MPSKKRRRKEERPKIHPKNKYSDNPPDFALLASLYPSFKPFVFYSREGRPKIDWTDFNATRELTRVLLLHDHGLDWWIPDGQLCPTVPNRSNYIHWIEDLLSSDIIPKTNSNGDNVRGFDIGTGANCIYPLLGASLLGWSFVASDVTDVALEWAERNVKSNQHVSELIEIRKVKCSQNTHTPEVLNNTESTCSEEGEGLPSSSFHMPESKDKRYHGPPILVNVVRDGEKFDFCMCNPPFFESIEEAGLNPKTSCGGTHEEMVCPGGEKAFITCIIEDSAVLKQSFRWYTSMVGRKVNLKFLIAKLREVGVTIVKTTEFVQGQTCRWGLAWSFVPPTKKIIAPHVTEKNIISFMLEGLQRQFGAVQVLQSVESFFHAVGASCKSNASTFTVDITASTDHCNVLLRNEVKHHDEVASCSNVQEASPNLCFRVSVFQQIPGTLLIKGSLQHRDSPLSGLFSSIIQQLEDALRSKFCREKANF